Pakistan condemned US raid as a violation of sovereignty which embarrassed and outraged the military. Military officials say it has caused a breakdown in trust which has cast a shadow over security cooperation.
Pakistan might be tricky ally but it is vital to US efforts to combat militants and to efforts to stabilise Afghanistan, where US forces depend on Pakistani supply lines for water, food, fuel and other essentials.
In a sign of Pakistani anger, the chairman of Pakistan's joint chiefs of staff committee, General Khalid Shameem Wynne, on Friday cancelled a five-day visit to the United States that had been set to begin on May 22.
But officials in Pakistan's civilian government said security cooperation with the United States would go on.
The United States is likely to seek Pakistani help in an investigation into an imam of a Florida mosque and his two sons, arrested in the United States on Saturday on charges of financing the local Taliban.
Three others charged were living in Pakistan, US officials said. Pakistan's Foreign Ministry said had yet to get a request for help but was ready to assist.
"As far as countering terrorism is concerned, there has been constant cooperation with the United States and there is no suspension of it," said ministry spokeswoman Tehmina Janjua.
Details of Kerry's visit have not been announced but media said he will be in Islamabad for talks on Monday.
Pakistan's parliament condemned on Saturday the U.S raid to find and kill bin Laden, and called for a review of US ties, warning that Pakistan could cut US supply lines to its forces in Afghanistan if there were more such attacks.
Kerry, speaking a day after two suicide bombers killed 89 people at a Pakistani paramilitary academy, said Pakistan was a victim of extremism and faced its own tough decisions.